Thanks, I guess I just got excited when I saw that.
For those looking for something like this, I found the below software. All you have to do is right click a folder and choose "Auto-rotate" from the windows menu and a basic dos program opens up and runs.
http://www.pilpi.net/software/JPEG-EXIF_autorotate.php
It did seem to mess up the thumbnails though, so I had to delete my thumbnail cache using the disk cleanup wizard.